PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41311.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family RAV
Protein Properties Length: 345aa    MW: 38795.1 Da    PI: 9.8686
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41311.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.9e-1362110155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+ykGV   + +grW A+I++      ++r++lg+f  +eeAa  ++ a++k++g
  KFK41311.1  62 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAHSYDIAARKFRG 110
                 89****9888.8*********3.....5*************************98 PP

2B3103.21.4e-32184285195
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+ tpsdv+k++rlv+pk++ae+h       + + ++++ + +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+++   +++l
  KFK41311.1 184 FEKAVTPSDVGKLNRLVIPKQHAEKHfplplspSPSVTKGVLINFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERSTGPDRQL 282
                 89***************************999844446999*************************************************876677777 PP

                 EEE CS
          B3  93 vvk 95 
                 ++ 
  KFK41311.1 283 YID 285
                 765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-762110IPR001471AP2/ERF domain
CDDcd000182.64E-2562120No hitNo description
SuperFamilySSF541717.85E-1762119IPR016177DNA-binding domain
SMARTSM003802.7E-2963124IPR001471AP2/ERF domain
PROSITE profilePS5103220.20563118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-2063118IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.2E-40173290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-31181281IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-28183275No hitNo description
SMARTSM010193.8E-26184290IPR003340B3 DNA binding domain
PROSITE profilePS5086314.015184290IPR003340B3 DNA binding domain
PfamPF023623.3E-29184286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MVSSCIDEIS STSESFPTAK KFSPPPPPPA ALRLYRMGSD GSSVVLDSEN CVETESRKLP  60
SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEEEAAHS YDIAARKFRG RDAVVNFKTT  120
LDDDVLAFLE AHSKAEIVDM LRKHTYADEL DQSNKRRILS VDVNGKPKVT SQNDSVSRTR  180
EVLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLPLSPSPSV TKGVLINFED VTGKVWRFRY  240
SYWNSSQSYV LTKGWSRFVK EKNLRAGDVV TFERSTGPDR QLYIDWKIRS GPSNNPVQVV  300
VRLFGVDIFN AKPNDVVAVC GGKRSRDVDM FALRCSKKQA IINAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-6018129111119DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887208.10.0AP2 domain-containing protein RAP2.8
SwissprotP822800.0RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A087HGQ90.0A0A087HGQ9_ARAAL; Ap2 erf and b3 domain-containing transcription factor rav2
STRINGfgenesh2_kg.2__1141__AT1G68840.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.20.0related to ABI3/VP1 2